ESC
Armin Bayati, PhD
Armin Bayati, PhD

Neuroscience, Cell Biology & Translational Drug Discovery

Research Fellow at Harvard Medical School and Massachusetts General Hospital. My work spans neuroscience, cancer immunology, infectious disease, pancreatic biology, and cardiovascular biology — using iPSC-derived cell models, high-content imaging, flow cytometry, proteomics, and computational tools to dissect disease mechanisms and advance preclinical drug discovery.

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First-author, Nature Neuroscience
Developed novel iPSC-based Lewy body model for Parkinson's disease
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First to characterize SARS-CoV-2 cell entry
JBC Editors' Pick — clathrin-mediated endocytosis mechanism
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Led preclinical drug discovery programs
Novel therapeutics targeting neurodegeneration, viral entry & cancer
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25+ publications · 1,300+ citations
Harvard, McGill, Nature Neuroscience, Cell Reports, JBC, Lancet
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Background

I am a scientist with a Ph.D. in Neuroscience and Cell Biology from McGill University and 10+ years of hands-on research experience. My work centers on modeling neurodegenerative and infectious diseases using iPSC-derived neurons, molecular and cellular techniques, and advanced imaging to uncover disease pathophysiology and test preclinical compounds designed to reverse degeneration.

I have led projects that identified how pathogenic proteins enter and infect cells, uncovered mechanisms involved in neuronal degeneration, developed Python-based tools to analyze live-cell imaging, and helped advance novel small-molecule therapeutics targeting mitochondrial health, viral entry, and cellular aging.

25+
Peer-reviewed publications
1,300+
Citations
500K+
Paper downloads

With first-author studies in Nature Neuroscience, Cell Reports, and Journal of Biological Chemistry, my research bridges fundamental discovery with translational drug development across neuroscience, immunology, infectious disease, and oncology.

Research at a Glance
Impact metrics & technical breadth across 10+ years in biomedical research
Research Impact
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Publications
Nature Neurosci, Cell Reports, JBC
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Total Citations
Google Scholar verified
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First-Author Papers
Incl. Nature Neuroscience
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Institutional Affiliations
Harvard · McGill · MGB · MNI · UVic
Technical Breadth
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iPSC Lineages Differentiated
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qPCR Primer Pairs
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Flow Cytometry Panels
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Assay Platforms
CRISPR · Viral · Protein · Imaging
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Viral Vector Systems
Lenti · AAV · SARS-CoV-2
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Differentiation Protocols
Neurons · Islets · Immune
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Work Experience & Education

2024 – Present
Harvard Medical School & Mass General Brigham — Research Fellow / Research Instructor
Led preclinical testing of novel drug candidates targeting neurodegeneration, cellular aging, and cancer. Designed high-throughput imaging assays for cytotoxicity, mitophagy, and protein aggregation. Established iPSC differentiation protocols across neuronal and endodermal lineages. Created Python-based pipelines (AutoMorphoTrack) for automated live-cell imaging analysis. Mentored and supervised junior scientists.
2023 – 2024
Montreal Neurological Institute & McGill University — Research Associate
Led multi-year Parkinson's disease program culminating in first- and corresponding-author Nature Neuroscience publication. Advanced iPSC-based disease modeling to dissect mechanisms of apoptosis, autophagy, and protein aggregation. Developed high-resolution electron microscopy workflows. Applied CRISPR/siRNA editing to identify therapeutic targets. Designed EV/exosome transfer assays using CD63/CD9 reporter systems. Integrated mass spectrometry–based proteomics for biomarker discovery. Trained and supervised junior team members.
2018 – 2023
McGill University — Ph.D. in Neuroscience, Cell Biology
PhD research at the Montreal Neurological Institute focused on modeling neurodegenerative and infectious diseases using human cancer cell lines and iPSC-derived neurons. Uncovered molecular mechanisms of protein aggregation, mitochondrial dysfunction, and neuronal vulnerability. Published the first paper on the internalization of SARS-CoV-2. Work with BSL-2 and BSL-3 environments.
2018
University of Victoria — Undergraduate Researcher (USRA)
Tissue processing, sectioning, and sample preparation for electron microscopy in the Nahirney lab.
2013 – 2018
University of Victoria — B.Sc. (Honours) with Distinction
Honours work exploring the neurodegenerative effects of stroke in mice using electron microscopy.
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Explore My Work

My research spans iPSC-based disease modeling, cellular and molecular assays, advanced microscopy, drug discovery, automation, and computational image analysis.

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iPSC-Derived Neurons
Dopaminergic, cortical, and glial differentiation. Lewy body disease modeling. MEA electrophysiology, calcium imaging, HPLC dopamine quantification.
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Biologics & Immunotherapy
Preclinical receptor target ID, anti-cytokine biologics (anti-TNFα, anti-IL-1β, anti-IL-6), anti-α-synuclein antibodies, and combination neuroprotection in iPSC-DA neurons.
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Differentiation Protocols
Interactive step-by-step protocols for dopaminergic, cortical, NGN2+, and cardiomyocyte iPSC differentiation with reagents, timelines, and QC checkpoints.
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iPSC-Derived Cardiomyocytes
Cardiac differentiation, MEA beat-rate analysis, calcium transient profiling, cardiotoxicity screening, and disease modeling (HCM, DCM).
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Neuroimmunology
LRRK2 immune phenotyping, microglial activation, MHC-I/II regulation, neuroinflammatory cytokine profiling, and PFF-induced immune responses in iPSC and mouse models of Parkinson's disease.
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Cancer Immunology
T-cell killing, ADCC/CDC, checkpoint blockade, cytokine profiling, CAR-T characterization, and immune co-culture systems.
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Cellular & Functional Assays
Endocytosis, exosomal biology, autophagy, flow cytometry, PBMC/immune assays, plate-based readouts, and immunocytochemistry.
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Endocytosis & Cargo Delivery
Quantitative internalization kinetics, CME vs. macropinocytosis pathway dissection, endosomal trafficking, host kinase targets, and subcellular localization assays.
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Primary Neuronal Culture
E18 rat hippocampal dissection, culture, lysosomal trafficking, MEA electrophysiology, and cargo delivery in primary neurons.
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Primary Cardiomyocyte Culture
Neonatal rat ventricular myocyte isolation, contractility analysis, calcium transients, and cardiotoxicity screening.
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Genetics & Molecular Biology
CRISPR, siRNA/shRNA/ASO, molecular cloning, viral constructs, protein conjugation, and lysosomal biology.
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CRISPR Screening
Interactive outcomes from mitophagy, α-synuclein uptake, and SARS-CoV-2 entry CRISPR screening campaigns with generated data visualizations.
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Drug Discovery & Translation
Parkin agonists, TAC evaluation, lysosomal rescue, antivirals, and biomarker strategy.
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Microscopy & Imaging
Confocal, STED super-resolution, TEM, live-cell imaging, high-content screening, and IHC/histology.
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Proteomics & Single-Cell Genomics
TMT quantitative proteomics, scRNA-seq (10x Genomics), bulk RNA-seq, GSEA/pathway analysis, UMAP visualization, DESeq2/Seurat pipelines.
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Coding, Automation & Data
AutoMorphoTrack, Python pipelines, BRAVO/Tecan liquid handling, 96/384-well miniaturization, and machine learning.
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Full Technical Skills
Comprehensive categorized listing of all techniques, instruments, software, and capabilities.
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Publications
25+ peer-reviewed papers with 1,300+ citations.
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Recent Activity

Feb 2026
Nature (Under Review) — Neural cell state modulation by PARK2 and dopaminergic neuroprotection by small molecule Parkin agonism.
Feb 2026
Translational Neurodegeneration (Under Review) — Axonal and Synaptic Dysfunction as the Convergent Driver of Neurodegenerative Cascades.
Feb 2026
eLife — AutoMorphoTrack: A Platform for Quantitative Organelle Analysis.
Feb 2026
YouTube Interview — AutoMorphoTrack: A Platform for Quantitative Organelle Analysis. Watch →
Jan 2026
Nature Immunology (Under Review) — Myeloid PINK1 represses mtDNA release and immune signaling that impacts neuronal pathology in patient-derived idiopathic PD models.
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Core Expertise

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iPSC Disease Modeling
Patient-derived iPSCs differentiated into dopaminergic neurons, cortical neurons, pancreatic β-islet cells, cardiomyocytes, endodermal lineages, and glia for in vitro disease recreation and drug screening.
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Parkinson's Disease
Deep expertise in iPSC-derived dopaminergic neuron biology, including α-synuclein aggregation, Lewy body modeling, mitophagy, lysosomal dysfunction, and PINK1/Parkin pathway dissection.
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Cardiac & Metabolic Biology
iPSC-derived cardiomyocyte differentiation, cardiotoxicity screening, MEA electrophysiology, calcium transient profiling, and Seahorse XF metabolic flux analysis for mitochondrial bioenergetics.
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Cancer Biology
Immune co-culture systems, T-cell killing assays, ADCC/CDC, checkpoint blockade evaluation, CAR-T characterization, and cytokine profiling across tumor microenvironment models.
Reach out to Armin
Questions, collaborations, or opportunities — I'd love to hear from you.