ESC
iPSC — Pancreatic

iPSC-Derived Pancreatic β-Cells & SC-Islets

I differentiate human iPSCs into stem-cell-derived β-cells (SC-β) and self-organizing SC-islet clusters using a 6-stage definitive-endoderm-to-endocrine protocol. These insulin-secreting clusters respond to glucose challenge and provide a tractable platform for modeling type 1 and type 2 diabetes, MODY mutations, and β-cell replacement strategies. Across each stage I integrate flow cytometry, immunofluorescence, GSIS, and bulk/single-cell transcriptomics.

SC-β Differentiation GSIS Characterization Diabetes Modeling RNA-seq Full Protocol
01

Six-Stage SC-β Differentiation

I use a refined Pagliuca/Rezania-style protocol, taking iPSCs through definitive endoderm, primitive gut tube, posterior foregut, pancreatic progenitors, endocrine progenitors, and finally insulin-producing β-like cells. Each transition is gated by signaling cocktails (Activin A, KGF, retinoic acid, γ-secretase inhibition, T3, AXL inhibition) and validated by lineage-defining transcription factors.

Differentiation Timeline
iPSC → Definitive Endoderm → PFG → PP → EP → SC-β
Day 0–3
Definitive Endoderm (DE)
SOX17 · FOXA2 · CXCR4
Activin A (100 ng/mL) + CHIR99021 (3 µM, day 1).
Day 3–6
Primitive Gut Tube
HNF1B · HNF4α
KGF (50 ng/mL) ramp; ITS-X.

Activin A 100 ng/mL + CHIR99021 3 µM (Day 1 only). Validate >80% SOX17+/FOXA2+ by flow before proceeding.

Day 6–9
Posterior Foregut
PDX1 · FOXA2
Retinoic acid (2 µM) + LDN-193189 + KGF + Cyclopamine.
Day 9–13
Pancreatic Progenitor
PDX1 · NKX6.1 · SOX9
EGF, KGF, B27-vitA. Aim for >50% PDX1+/NKX6.1+ co-positive.

Retinoic acid 2 µM + LDN-193189 + KGF + Cyclopamine. PDX1 induction marks pancreatic commitment.

Day 13–20
Endocrine Progenitor
NEUROG3 · NEUROD1 · NKX2.2
γ-secretase inhibition (XXI), T3, ALK5-i (SB431542), Heparin.

γ-secretase inhibition with XXI 1 µM, T3 1 µM, ALK5-i (SB431542), Heparin. NEUROG3 transient burst → NEUROD1+ endocrine progenitors.

Day 20–30+
SC-β / SC-Islet
INS · C-PEPTIDE · MAFA · UCN3
Aggregate to clusters; mature in CMRL + ZnSO₄ + AXL inhibition. Functional GSIS at >D30.
  1. Stage 1 — Definitive Endoderm

    Plate iPSCs at high density; treat with Activin A + CHIR99021 (Day 1 only) for 3 days. Validate >80% SOX17+/FOXA2+ by flow.

  2. Stage 2–3 — Gut tube and posterior foregut

    Switch to KGF, then add retinoic acid + Cyclopamine + LDN-193189 to commit to PDX1+ pancreatic identity.

  3. Stage 4 — Pancreatic progenitors

    Continue KGF + EGF; sort or quantify PDX1+/NKX6.1+ co-positivity; expect >50% efficiency.

  4. Stage 5 — Endocrine commitment

    Add γ-secretase inhibitor XXI to silence Notch and induce NEUROG3+ endocrine progenitors. Co-treat with T3, SB431542 and heparin.

  5. Stage 6 — Aggregation & maturation

    Aggregate cells in low-attachment plates or rotational culture (~75 µm clusters). Mature 7–14+ days in CMRL + ZnSO₄ + AXL inhibition. Validate by static GSIS and dynamic perifusion.

>80%
SOX17+/FOXA2+ DE
>50%
PDX1+/NKX6.1+ pancreatic progenitors
2–4×
stimulation index by GSIS
SC-Islets
3D self-organizing clusters
02

Glucose-Stimulated Insulin Secretion

Mature SC-islets are starved in 2.8 mM glucose, then sequentially challenged with 2.8 mM, 16.7 mM, and 16.7 mM + 30 mM KCl. Static GSIS quantifies stimulation index (SI = high/low ratio >2 considered functional). Dynamic perifusion captures first- and second-phase insulin release with <1-min temporal resolution.

03

Multi-Modal Validation

Validation combines C-peptide/insulin co-staining (with C-peptide as the bona fide marker of de novo synthesis), DTZ live-cluster staining for zinc-rich granules, electron microscopy for mature secretory granules, and bulk + single-cell RNA-seq for α/β/δ cell identity assignment. See the Genomics & NGS page for representative pipelines.

INS C-Peptide PDX1 NKX6.1 MAFA UCN3 GCG SST
Flow Cytometry — % Marker-Positive at Stage 6
Mean ± SEM, n = 3 differentiations
Representative values from typical batches.
RT-qPCR — SC-β vs iPSC (log₂ FC)
ΔΔCt method · housekeeping: GAPDH, ACTB · n = 3
Bars above zero = up-regulated; bars below zero = down-regulated relative to undifferentiated iPSC.
04

Type 1, Type 2, MODY & Stress Models

SC-islets are stressed with cytokine cocktails (IFNγ + IL-1β + TNFα) for type-1-like immune attack; with palmitate or high glucose for type-2-like glucolipotoxicity; or compared genotype-matched to MODY-mutant lines (HNF1A, GCK, HNF4A) for monogenic diabetes. ER-stress (thapsigargin) and oxidative-stress (H₂O₂) challenges complete the panel.