ESC
iPSC — Mesenchymal

iPSC-Derived Mesenchymal Stromal Cells

I differentiate human iPSCs into mesenchymal stromal cells (iMSCs) — CD73+/CD90+/CD105+/CD45− multipotent stromal cells with tri-lineage potential (osteo-, chondro-, adipogenic). iMSCs serve as a renewable, donor-matched source for stromal-niche modeling, immunomodulation studies, fibrosis assays, and as a feeder/co-culture component for hematopoietic and neural lineages. They are also a tractable platform for in vitro fibrosis, EMT, and TGFβ-driven disease screens.

SMAD-i → iMSC Tri-Lineage Immunomodulation Fibrosis / EMT iPSC Hub RNA-seq
01

iPSC → iMSC Differentiation

I generate iMSCs using a SMAD-inhibition / EB-outgrowth strategy adapted from Wang/Lian and Kimbrel: iPSCs are aggregated into embryoid bodies (EBs) under TGFβ/BMP inhibition to commit to lateral-plate mesoderm, plated for outgrowth, and then expanded as adherent fibroblastic cells in MSC growth medium. Magnetic or FACS sorting on CD73+/CD105+/CD45 yields a homogeneous population that meets ISCT criteria for MSC identity.

Differentiation Timeline — iMSC
iPSC → EB → SMAD-i Mesoderm → Outgrowth → Sorted iMSC → Expanded iMSC
Day 0–1
Aggregate EBs
OCT4 · NANOG
Dissociate iPSCs to single cells; aggregate in low-attachment plates with ROCK-i.

Dissociate iPSCs to single cells with Accutase; aggregate ~3×10⁵ cells in AggreWell or low-attachment plates with Y-27632 10 µM.

Day 1–7
SMAD-i Mesoderm
T · KDR · PDGFRβ
EB medium + SB431542 (10 µM) ± BMP4 (10 ng/mL) for lateral-plate mesoderm.
Day 7–14
EB Outgrowth
VIM · CD44
Plate EBs on gelatin in MSC medium (α-MEM + 10% FBS or xeno-free) + FGF2.

EB medium (KSR or xeno-free) + SB431542 10 µM; optionally add BMP4 10 ng/mL on D2–4 for lateral-plate bias. T+/KDR+/PDGFRβ+ cells.

Day 14–21
Sort & Enrich
CD73 · CD90 · CD105
FACS or MACS for CD73+/CD105+/CD45; passage to remove residual iPSCs.
Day 21+
Expanded iMSC
ISCT criteria
Adherent, fibroblastic; passage at 1:3–1:6; banked at P3–P5.

FACS or MACS for CD73+ CD90+ CD105+ CD45 CD34; verify pluripotency-marker absence (TRA-1-60, SSEA-4).

  1. iPSC dissociation and EB formation (D0–1)

    Single-cell dissociate iPSCs with Accutase; aggregate ~3×10⁵ cells in AggreWell or low-attachment plates with ROCK-i.

  2. Mesoderm commitment (D1–7)

    EB medium (KSR-based or xeno-free) + SB431542 10 µM; optionally add BMP4 10 ng/mL on D2–4 for lateral-plate bias.

  3. Outgrowth (D7–14)

    Transfer EBs onto gelatin-coated plates; switch to MSC growth medium (α-MEM + 10% MSC-qualified FBS or xeno-free + FGF2 5 ng/mL).

  4. Enrichment (D14–21)

    FACS or MACS sort on CD73+ CD90+ CD105+ CD45 CD34; verify pluripotency-marker absence (TRA-1-60, SSEA-4).

  5. Banking and use (P3–P5)

    Passage 1:3–1:6; bank early passages; verify tri-lineage differentiation potential before each experimental cohort.

3 weeks
to MSC-like population
CD73/90/105+
surface marker triplet
CD45/34−
hematopoietic-negative
Tri-lineage
osteo · chondro · adipo
02

Tri-Lineage Differentiation & Surface Phenotype

Per ISCT criteria, iMSCs are validated by (i) plastic adherence, (ii) surface phenotype CD73+/CD90+/CD105+/CD45/CD34/CD11b/CD19/HLA-DR, and (iii) tri-lineage differentiation: osteogenic (Alizarin Red, RUNX2/OCN), chondrogenic (Alcian Blue, SOX9/COL2A1), and adipogenic (Oil Red O, PPARγ/FABP4). Bulk RNA-seq cross-validates MSC identity and tri-lineage capacity.

CD73 CD90 CD105 VIM CD45− CD34− HLA-DR−
Flow Cytometry — ISCT Surface Phenotype (P3)
Mean ± SEM, n = 3 differentiations
Representative values from typical batches.
RT-qPCR after Tri-Lineage Induction (log₂ FC vs uninduced iMSC)
ΔΔCt method · housekeeping: GAPDH, ACTB · n = 3
Bars above zero = up-regulated; bars below zero = down-regulated relative to undifferentiated iPSC.
03

Immunomodulatory & Trophic Functions

iMSCs suppress T-cell proliferation, polarize macrophages toward M2, and secrete trophic factors (HGF, VEGF, IL-6, IL-10, IDO). I read out these activities with mixed-lymphocyte reactions (MLRs), CFSE proliferation assays, cytokine multiplex panels (Luminex/MSD), and qPCR/RNA-seq of inflammation modules. iMSC-conditioned medium is used to feed neural and cardiac differentiations and to evaluate paracrine-driven phenotypes.

04

Fibrosis & EMT Models

Treatment with TGFβ1 (5–10 ng/mL) for 24–72 h induces a myofibroblast-like state characterized by α-SMA, COL1A1, FN1, and CTGF up-regulation. iMSC fibrosis cultures are used to screen anti-fibrotic compounds (pirfenidone, nintedanib, SMAD inhibitors) and to dissect TGFβ–SMAD signaling. Cross-lineage co-cultures with iPSC-derived alveolar (lung) or proximal-tubule (kidney) epithelium model fibrotic remodeling in IPF and chronic kidney disease.